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Home > Events > [FRB-CESAB] Data Toolbox for Reproducible Research in Computational Ecology – 2020
May 2020  I  Course  I  Cesab  I  Other subjects

[FRB-CESAB] Data Toolbox for Reproducible Research in Computational Ecology – 2020

Versioning, Reproducibility, Containerization, and Sharing

[FRB-CESAB] Data Toolbox for Reproducible Research in Computational Ecology – 2020

The CESAB and the GDR EcoStat organize the second edition of the training course “Data Toolbox for Reproducible Research in Computational Ecology“. The objective of this five-day course is to train young researchers in reproducibility, software development and version management tools (e.g. R, git, markdown, tidyverse, docker), applied to biodiversity research.

 

The training course will take place from 2 to 6 November 2020 and will be in French.

 

The registration fee is 100 € for the week and will be used to compensate the speakers. Students from laboratories member of the GDR EcoStat can apply for financial support from the GDR.

 

In view of the sanitary situation associated with the COVID-19 pandemic, the 2020 edition of this training course will take place remotely. 

 

List of speakers (in alphabetical order):

  • Nicolas CASAJUS (FRB-CESAB)
  • Stéphane DRAY (CNRS LBBE)
  • Olivier GIMENEZ (CNRS Cefe)
  • François GUILHAUMON (IRD Marbec)
  • Nina SCHIETTEKATTE (EPHE Criobe)

 

useful information

2-6 November 2020

 

The workshop will be held online.

Contact 

 

Nicolas CASAJUS 

FicheMail

Programme
Monday 2nd November 2020
09:00 – 11:00 Welcome and presentation of the week
11:00 – 12:30 Open Science and Reproducible Research
14:00 – 17:30 Versioning and sharing (git, GitHub, GitLab, etc.)
 
Tuesday 3rd November 2020
09:00 – 11:30 Research Compendium (rrtools, devtools, usethis)
11:30 – 12:30 Literate programming (Rmarkdown)
14:00 – 17:30 Data wrangling and visualization (tidyverse and sf)
 
Wednesday 4th November 2020
09:00 – 12:30 Workflow optimisation (drake)
14:00 – 17:30 Containerization (docker) and dependencies management (renv)
 
Thursday 5th November 2020
09:00 – 12:30 Group projects
14:00 – 17:30 Group projects
 
Friday 6th November  2020
09:00 – 12:30 Group projects
14:00 – 16:00 Projects presentation
co-organizer