[FRB-CESAB] Data Toolbox for Reproducible Research in Computational Ecology – 2024 - Fondation pour la recherche sur la biodiversité

Évènement

Home > Events > [FRB-CESAB] Data Toolbox for Reproducible Research in Computational Ecology – 2024

Version control, reproducibility, compendium and containerization

Pre-registrations for this training course are open.

Please beware, the number of places being limited, successful applications will be confirmed at the end of July.

The CESAB – Centre for Biodiversity Synthesis and Analysis – and the RT EcoStat organize the sixth edition of the training course “Data Toolbox for Reproducible Research in Computational Ecology”. The objective of this five-day course is to train young researchers in reproducibility, software development and version management tools (Git, GitHub, R Markdown, Quarto, renv, Docker), applied to biodiversity research.

This training will be given in French and will take place from December 2nd to 6th 2024 at CESAB in Montpellier. Its price is 150 € for the week – lunch included. Transportation, accommodation and evening meals are at the charge of the participants.

A good mastering of the R software is required.

Find the training course on GitHub

List of speakers (in alphabetical order):

Iago BONNICI (CNRS ISEM)
Nicolas CASAJUS (FRB-CESAB)
François GUILHAUMON (IRD Entropie)
Aurélie SIBERCHICOT (UCBL LBBE)

USEFUL INFORMATION

Formation:

2 to 6 December 2024

Pre-registration opening:

3 June 2024

Pre-registration deadline:

30 June 2024, midnight (CEST)

Inscription confirmation:

late July 2024

CESAB – FRB

5, rue de l’École de médecine

34000 Montpellier

FRANCE

Contact

Nicolas CASAJUS

Fiche – Mail

The first four days will consist of lectures followed by exercises.

Monday

Welcome and presentation of the week
Open science & Reproducible research
Project organization & Good practices
Version control with git

Tuesday

Version control with git (continued)
Collaboration & sharing with GitHub

Wednesday

Literate programming with Quarto
Pipeline optimization with targets
Developing an R package

Thursday

Freezing package versions with renv
Containerization with Docker
Subgroups projects

Friday

Subgroups projects
Subgroups projects presentation

Prénom *

Nom *

Email *

Fonction *

Institut (organisation) *

Ville *

Domaine d'expertise *

Êtes-vous en poste permanent ? *

Avez-vous déjà candidaté à cette formation ? *

Comment avez-vous eu connaissance de cette formation ? *

Votre niveau d'expertise

Quel est votre niveau en R ? *

Quel est votre niveau en git ? *

Quel est votre niveau R Markdown ? *

Quels sont vos projets de recherche actuels ? *

Qu'est-ce-que la reproductibilité pour vous ? *

Pourquoi souhaitez-vous participer à cette formation ? *

Quel projet souhaiteriez-vous mener lors des travaux en sous-groupes ? *

Avez-vous des commentaires ?

Je souhaite recevoir les informations de

FRB
Cesab (en anglais)

Name

co-organizers

[FRB-CESAB] Data Toolbox for Reproducible Research in Computational Ecology – 2024

Version control, reproducibility, compendium and containerization

Votre niveau d'expertise

co-organizers

English version coming soon