
{"id":21994,"date":"2023-04-07T14:06:58","date_gmt":"2023-04-07T12:06:58","guid":{"rendered":"https:\/\/www.fondationbiodiversite.fr\/?page_id=21994"},"modified":"2026-03-27T16:40:37","modified_gmt":"2026-03-27T15:40:37","slug":"best-practice-for-reproducible-research-in-computational-ecology","status":"publish","type":"page","link":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/","title":{"rendered":"Best practice for reproducible research in computational ecology"},"content":{"rendered":"<p>&nbsp;<\/p>\n<div>\n<p>The objective of this five-day course, co-organized with the <strong><a href=\"https:\/\/sites.google.com\/site\/gdrecostat\/\">GDR EcoStat<\/a><\/strong>, is to train young researchers in reproducibility, software development and version management tools (Git, GitHub, Quarto, renv and Docker), applied to biodiversity research.<\/p>\n<p>&nbsp;<\/p>\n<p>\nThis course is delivered in <strong>French<\/strong> and takes place in December at CESAB\u2019s premises in Montpellier. The fee is <strong>250 \u20ac for the week<\/strong>, including lunch. Travel, accommodation, and evening meal costs are the responsibility of the participants.\n<\/p>\n<\/div>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p style=\"text-align: center;\"><a class=\"bt\" href=\"https:\/\/rdatatoolbox.github.io\/\">Find the course on Github<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p style=\"text-align: center;\">\n<div class=\"bloc_gris\">\n<p><strong>Proficiency in R software is required.<\/strong><\/p>\n<p style=\"text-align: center;\"><\/div>\n<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><strong>List of speakers:<\/strong><\/p>\n<ul>\n<li>Iago BONNICI (CNRS ISEM)<\/li>\n<li>Nicolas CASAJUS (FRB-Cesab)<\/li>\n<li>Fran\u00e7ois GUILHAUMON (IRD Entropie)<\/li>\n<li>Aur\u00e9lie SIBERCHICOT (UCBL LBBE)<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><strong>Former speakers:<\/strong><\/p>\n<ul>\n<li>St\u00e9phane DRAY (CNRS LBBE)<\/li>\n<li>Olivier GIMENEZ (CNRS CEFE)<\/li>\n<li>Lorele\u00ef GUERY (CIRAD PHIM)<\/li>\n<li>Nina SCHIETTEKATTE (EPHE CRIOBE)<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>&nbsp; The objective of this five-day course, co-organized with the GDR EcoStat, is to train young researchers in reproducibility, software development and version management tools (Git, GitHub, Quarto, renv and Docker), applied to biodiversity research. &nbsp; This course is delivered in French and takes place in December at CESAB\u2019s premises in Montpellier. The fee is [&hellip;]<\/p>\n","protected":false},"author":15,"featured_media":21973,"parent":10959,"menu_order":6,"comment_status":"closed","ping_status":"closed","template":"temp_projet.php","meta":{"_acf_changed":false,"inline_featured_image":false,"footnotes":""},"class_list":["post-21994","page","type-page","status-publish","has-post-thumbnail","hentry"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.4 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Best practice for reproducible research in computational ecology - Fondation pour la recherche sur la biodiversit\u00e9<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Best practice for reproducible research in computational ecology - Fondation pour la recherche sur la biodiversit\u00e9\" \/>\n<meta property=\"og:description\" content=\"&nbsp; The objective of this five-day course, co-organized with the GDR EcoStat, is to train young researchers in reproducibility, software development and version management tools (Git, GitHub, Quarto, renv and Docker), applied to biodiversity research. &nbsp; This course is delivered in French and takes place in December at CESAB\u2019s premises in Montpellier. The fee is [&hellip;]\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/\" \/>\n<meta property=\"og:site_name\" content=\"Fondation pour la recherche sur la biodiversit\u00e9\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/FRBiodiv#\" \/>\n<meta property=\"article:modified_time\" content=\"2026-03-27T15:40:37+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.fondationbiodiversite.fr\/wp-content\/uploads\/2023\/04\/logo-rdatatoolbox_web-2.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"690\" \/>\n\t<meta property=\"og:image:height\" content=\"690\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:site\" content=\"@FRBiodiv\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/programs-and-projects\\\/le-cesab\\\/develop-skills\\\/best-practice-for-reproducible-research-in-computational-ecology\\\/\",\"url\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/programs-and-projects\\\/le-cesab\\\/develop-skills\\\/best-practice-for-reproducible-research-in-computational-ecology\\\/\",\"name\":\"Best practice for reproducible research in computational ecology - Fondation pour la recherche sur la biodiversit\u00e9\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/#website\"},\"primaryImageOfPage\":{\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/programs-and-projects\\\/le-cesab\\\/develop-skills\\\/best-practice-for-reproducible-research-in-computational-ecology\\\/#primaryimage\"},\"image\":{\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/programs-and-projects\\\/le-cesab\\\/develop-skills\\\/best-practice-for-reproducible-research-in-computational-ecology\\\/#primaryimage\"},\"thumbnailUrl\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/wp-content\\\/uploads\\\/2023\\\/04\\\/logo-rdatatoolbox_web-2.jpg\",\"datePublished\":\"2023-04-07T12:06:58+00:00\",\"dateModified\":\"2026-03-27T15:40:37+00:00\",\"breadcrumb\":{\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/programs-and-projects\\\/le-cesab\\\/develop-skills\\\/best-practice-for-reproducible-research-in-computational-ecology\\\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/programs-and-projects\\\/le-cesab\\\/develop-skills\\\/best-practice-for-reproducible-research-in-computational-ecology\\\/\"]}]},{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/programs-and-projects\\\/le-cesab\\\/develop-skills\\\/best-practice-for-reproducible-research-in-computational-ecology\\\/#primaryimage\",\"url\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/wp-content\\\/uploads\\\/2023\\\/04\\\/logo-rdatatoolbox_web-2.jpg\",\"contentUrl\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/wp-content\\\/uploads\\\/2023\\\/04\\\/logo-rdatatoolbox_web-2.jpg\",\"width\":690,\"height\":690},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/programs-and-projects\\\/le-cesab\\\/develop-skills\\\/best-practice-for-reproducible-research-in-computational-ecology\\\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Accueil\",\"item\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"The FRB in action\",\"item\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/\"},{\"@type\":\"ListItem\",\"position\":3,\"name\":\"The FRB&#8217;s programs &#038; projects\",\"item\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/programs-and-projects\\\/\"},{\"@type\":\"ListItem\",\"position\":4,\"name\":\"Synthesis at CESAB\",\"item\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/programs-and-projects\\\/le-cesab\\\/\"},{\"@type\":\"ListItem\",\"position\":5,\"name\":\"CESAB training courses\",\"item\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/the-frb-in-action\\\/programs-and-projects\\\/le-cesab\\\/develop-skills\\\/\"},{\"@type\":\"ListItem\",\"position\":6,\"name\":\"Best practice for reproducible research in computational ecology\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/#website\",\"url\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/\",\"name\":\"Fondation pour la recherche sur la biodiversit\u00e9\",\"description\":\"Une plateforme entre les diff\u00e9rents acteurs scientifiques et les acteurs de la soci\u00e9t\u00e9 sur la biodiversit\u00e9..\",\"publisher\":{\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/#organization\"},\"alternateName\":\"FRB\",\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"},{\"@type\":\"Organization\",\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/#organization\",\"name\":\"Fondation pour la recherche sur la biodiversit\u00e9\",\"url\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/\",\"logo\":{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/#\\\/schema\\\/logo\\\/image\\\/\",\"url\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/wp-content\\\/uploads\\\/2025\\\/10\\\/logo_FRB_RVB.png\",\"contentUrl\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/wp-content\\\/uploads\\\/2025\\\/10\\\/logo_FRB_RVB.png\",\"width\":220,\"height\":220,\"caption\":\"Fondation pour la recherche sur la biodiversit\u00e9\"},\"image\":{\"@id\":\"https:\\\/\\\/www.fondationbiodiversite.fr\\\/en\\\/#\\\/schema\\\/logo\\\/image\\\/\"},\"sameAs\":[\"https:\\\/\\\/www.facebook.com\\\/FRBiodiv#\",\"https:\\\/\\\/x.com\\\/FRBiodiv\",\"https:\\\/\\\/bsky.app\\\/profile\\\/frbiodiv.bsky.social\",\"https:\\\/\\\/www.instagram.com\\\/frbiodiv\\\/\",\"https:\\\/\\\/www.linkedin.com\\\/in\\\/fondation-pour-la-recherche-sur-la-biodiversit-223059121\\\/\",\"https:\\\/\\\/www.youtube.com\\\/@FRBiodiv\"]}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Best practice for reproducible research in computational ecology - Fondation pour la recherche sur la biodiversit\u00e9","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/","og_locale":"en_US","og_type":"article","og_title":"Best practice for reproducible research in computational ecology - Fondation pour la recherche sur la biodiversit\u00e9","og_description":"&nbsp; The objective of this five-day course, co-organized with the GDR EcoStat, is to train young researchers in reproducibility, software development and version management tools (Git, GitHub, Quarto, renv and Docker), applied to biodiversity research. &nbsp; This course is delivered in French and takes place in December at CESAB\u2019s premises in Montpellier. The fee is [&hellip;]","og_url":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/","og_site_name":"Fondation pour la recherche sur la biodiversit\u00e9","article_publisher":"https:\/\/www.facebook.com\/FRBiodiv#","article_modified_time":"2026-03-27T15:40:37+00:00","og_image":[{"width":690,"height":690,"url":"https:\/\/www.fondationbiodiversite.fr\/wp-content\/uploads\/2023\/04\/logo-rdatatoolbox_web-2.jpg","type":"image\/jpeg"}],"twitter_card":"summary_large_image","twitter_site":"@FRBiodiv","twitter_misc":{"Est. reading time":"2 minutes"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/","url":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/","name":"Best practice for reproducible research in computational ecology - Fondation pour la recherche sur la biodiversit\u00e9","isPartOf":{"@id":"https:\/\/www.fondationbiodiversite.fr\/en\/#website"},"primaryImageOfPage":{"@id":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/#primaryimage"},"image":{"@id":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/#primaryimage"},"thumbnailUrl":"https:\/\/www.fondationbiodiversite.fr\/wp-content\/uploads\/2023\/04\/logo-rdatatoolbox_web-2.jpg","datePublished":"2023-04-07T12:06:58+00:00","dateModified":"2026-03-27T15:40:37+00:00","breadcrumb":{"@id":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/"]}]},{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/#primaryimage","url":"https:\/\/www.fondationbiodiversite.fr\/wp-content\/uploads\/2023\/04\/logo-rdatatoolbox_web-2.jpg","contentUrl":"https:\/\/www.fondationbiodiversite.fr\/wp-content\/uploads\/2023\/04\/logo-rdatatoolbox_web-2.jpg","width":690,"height":690},{"@type":"BreadcrumbList","@id":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/best-practice-for-reproducible-research-in-computational-ecology\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Accueil","item":"https:\/\/www.fondationbiodiversite.fr\/en\/"},{"@type":"ListItem","position":2,"name":"The FRB in action","item":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/"},{"@type":"ListItem","position":3,"name":"The FRB&#8217;s programs &#038; projects","item":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/"},{"@type":"ListItem","position":4,"name":"Synthesis at CESAB","item":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/"},{"@type":"ListItem","position":5,"name":"CESAB training courses","item":"https:\/\/www.fondationbiodiversite.fr\/en\/the-frb-in-action\/programs-and-projects\/le-cesab\/develop-skills\/"},{"@type":"ListItem","position":6,"name":"Best practice for reproducible research in computational ecology"}]},{"@type":"WebSite","@id":"https:\/\/www.fondationbiodiversite.fr\/en\/#website","url":"https:\/\/www.fondationbiodiversite.fr\/en\/","name":"Fondation pour la recherche sur la biodiversit\u00e9","description":"Une plateforme entre les diff\u00e9rents acteurs scientifiques et les acteurs de la soci\u00e9t\u00e9 sur la biodiversit\u00e9..","publisher":{"@id":"https:\/\/www.fondationbiodiversite.fr\/en\/#organization"},"alternateName":"FRB","potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/www.fondationbiodiversite.fr\/en\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"en-US"},{"@type":"Organization","@id":"https:\/\/www.fondationbiodiversite.fr\/en\/#organization","name":"Fondation pour la recherche sur la biodiversit\u00e9","url":"https:\/\/www.fondationbiodiversite.fr\/en\/","logo":{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/www.fondationbiodiversite.fr\/en\/#\/schema\/logo\/image\/","url":"https:\/\/www.fondationbiodiversite.fr\/wp-content\/uploads\/2025\/10\/logo_FRB_RVB.png","contentUrl":"https:\/\/www.fondationbiodiversite.fr\/wp-content\/uploads\/2025\/10\/logo_FRB_RVB.png","width":220,"height":220,"caption":"Fondation pour la recherche sur la biodiversit\u00e9"},"image":{"@id":"https:\/\/www.fondationbiodiversite.fr\/en\/#\/schema\/logo\/image\/"},"sameAs":["https:\/\/www.facebook.com\/FRBiodiv#","https:\/\/x.com\/FRBiodiv","https:\/\/bsky.app\/profile\/frbiodiv.bsky.social","https:\/\/www.instagram.com\/frbiodiv\/","https:\/\/www.linkedin.com\/in\/fondation-pour-la-recherche-sur-la-biodiversit-223059121\/","https:\/\/www.youtube.com\/@FRBiodiv"]}]}},"_links":{"self":[{"href":"https:\/\/www.fondationbiodiversite.fr\/en\/wp-json\/wp\/v2\/pages\/21994","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.fondationbiodiversite.fr\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.fondationbiodiversite.fr\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.fondationbiodiversite.fr\/en\/wp-json\/wp\/v2\/users\/15"}],"replies":[{"embeddable":true,"href":"https:\/\/www.fondationbiodiversite.fr\/en\/wp-json\/wp\/v2\/comments?post=21994"}],"version-history":[{"count":16,"href":"https:\/\/www.fondationbiodiversite.fr\/en\/wp-json\/wp\/v2\/pages\/21994\/revisions"}],"predecessor-version":[{"id":36672,"href":"https:\/\/www.fondationbiodiversite.fr\/en\/wp-json\/wp\/v2\/pages\/21994\/revisions\/36672"}],"up":[{"embeddable":true,"href":"https:\/\/www.fondationbiodiversite.fr\/en\/wp-json\/wp\/v2\/pages\/10959"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.fondationbiodiversite.fr\/en\/wp-json\/wp\/v2\/media\/21973"}],"wp:attachment":[{"href":"https:\/\/www.fondationbiodiversite.fr\/en\/wp-json\/wp\/v2\/media?parent=21994"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}